function [ ] = main(pCallbacks, pTrackingMethods, pInterpolationMethods, pSoundspeedMethods, pOffsetsToCopy)
%MAIN Contains the definition of main ARTOA4 gui.

global artoaGui;

%% Initialize callbacks

availableCallbacks = { ...
    'CloseRequestFcn', ...
    'WindowButtonDownFcn', ...
    'loadRfb', ...
    'loadInterim', ...
    'loadSoundsourceFile', ...
    'saveRfc', ...
    'saveInterim', ...
    'saveOptimumTables', ...
    'saveTrajectoryToProfile', ...
    'loadArtoaIni', ...
    'reloadSoundsourceFile', ...
    'reloadRfbFile', ...
    'convertProfilesToRfb', ...
    'quit', ...
    'openEditTemperature', ...
    'openEditPressure', ...
    'openEditTimeOfArrival', ...
    'openEditOffsets', ...
    'openTrackParameter', ...
    'openTrackTrajectoryOutput', ...
    'switchHideDeletedDataPoints', ...
    'checkboxDopplerCorrection', ... % FIRST ITEM TRACK PARAMETER CALLBACKS
    'checkboxBackwardTracking', ...
    'comboboxInterpolationMethod', ...
    'comboboxSoundspeedMethod', ...
    'checkboxPlotResiduals', ...
    'inputOutputInterpolationInterval', ...
    'inputGapSize', ...
    'tableSoundSourceCombinationsSelection', ...
    'tableSoundSourceCombinationsEdit', ...
    'buttonTrack', ...
    'buttonAddCombination', ...
    'buttonAddCombinationAbove', ...
    'buttonDuplicateCombination', ...
    'buttonRemoveCombination', ...
    'buttonResetAllCombinations', ...
    'tableSoundsourceOffsetsSelect', ... % FIRST ITEM OF OFFSETS
    'tableSoundsourceOffsetsEdit', ...
    'tableSoundspeedEdit', ...
    'buttonCalculateOffsets', ...
    'checkboxUseOffsets', ...
    'buttonCopyOffsets', ...
    'buttonAppliedToNan', ...
    'buttonUndoLastCopy' ...
};

for i = 1:length(availableCallbacks) % check if a callback is undefined
    if ~isfield(pCallbacks, availableCallbacks{i})
        pCallbacks.(availableCallbacks{i}) = @(~, ~) false;
    end
end

%% Initialize main window

artoaGui.figures.main = figure( ...
    'Name', 'ARTOA 4', ...
    'NumberTitle', 'off', ...
    'Color', 'white', ...
    'MenuBar', 'none', ...
    'Units', 'characters' ...
);

%% Geometry variables

heightWindow = 60; % [characters]
widthWindow = 129; % [characters]
heightFrame = .4;
heightTrackingFrame = .5;
widthFrame = .95;
spacer = .025;

%% Set window height
artoaGui.figures.main.Position(3) = widthWindow;
artoaGui.figures.main.Position(4) = heightWindow;

%% Set extraordinary callbacks
set(artoaGui.figures.main, 'CloseRequestFcn', pCallbacks.CloseRequestFcn);
set(artoaGui.figures.main, 'WindowButtonDownFcn', pCallbacks.WindowButtonDownFcn);

%% Initialize file menu
artoaGui.main.menus = struct();

artoaGui.main.menus.file = uimenu(artoaGui.figures.main, 'Label', 'File');
% LOAD
loadHandle = uimenu(artoaGui.main.menus.file, 'Label', 'Load');
uimenu( ...
    loadHandle, ...
    'Label', 'ARGOS file', ...%'Callback', 'artoa.controller.loadArgos' ...
    'Enable', 'off' ...
);
uimenu( ...
    loadHandle, ...
    'Label', 'RFB file', ...
    'Callback', pCallbacks.loadRfb ...
);
uimenu( ...
    loadHandle, ...
    'Label', 'Interim file', ...
    'Callback', pCallbacks.loadInterim ...
);
uimenu( ...
    loadHandle, ...
    'Label', 'SoSo file', ...
    'Callback', pCallbacks.loadSoundsourceFile ...
);


% SAVE
artoaGui.main.menus.fileSave = uimenu( ...
    artoaGui.main.menus.file, ...
    'Label', 'Save', ...
    'Enable', 'off' ...
);

uimenu( ...
    artoaGui.main.menus.fileSave, ...
    'Label', 'RFC file', ...
    'Callback', pCallbacks.saveRfc ...
);

uimenu( ...
    artoaGui.main.menus.fileSave, ...
    'Label', 'Interim file', ...
    'Callback', pCallbacks.saveInterim ...
);

uimenu( ...
    artoaGui.main.menus.fileSave, ...
    'Label', 'Optimum tables', ...
    'Callback', pCallbacks.saveOptimumTables ...
);

uimenu( ...
    artoaGui.main.menus.fileSave, ...
    'Label', 'Trajectory to .profile', ...
    'Callback', pCallbacks.saveTrajectoryToProfile ...
);

% CONVERT
artoaGui.main.menus.fileConvert = uimenu( ...
    artoaGui.main.menus.file, ...
    'Label', 'Convert', ...
    'Enable', 'on' ...
);

uimenu( ...
    artoaGui.main.menus.fileConvert, ...
    'Label', '*.profile to .rfb', ...
    'Callback', pCallbacks.convertProfilesToRfb ...
);

% RELOAD
artoaGui.main.menus.fileReload = uimenu( ...
    artoaGui.main.menus.file, ...
    'Label', 'Reload', ...
    'Enable', 'on' ...
);

% ARTOA INI
artoaGui.main.menus.fileReloadArtoaIni = uimenu( ...
    artoaGui.main.menus.fileReload, ...
    'Label', 'artoa.ini', ...
    'Callback', pCallbacks.loadArtoaIni ...
);

% SOSO FILE
artoaGui.main.menus.fileReloadSoundsourceFile = uimenu( ...
    artoaGui.main.menus.fileReload, ...
    'Label', 'Soundsource file', ...
    'Callback', pCallbacks.reloadSoundsourceFile ...
);

% RFB FILE
artoaGui.main.menus.fileReloadRfbeFile = uimenu( ...
    artoaGui.main.menus.fileReload, ...
    'Label', 'RFB metadata', ...
    'Callback', pCallbacks.reloadRfbFile ...
);

% QUIT
artoaGui.main.menus.fileQuit = uimenu( ...
    artoaGui.main.menus.file, ...
    'Label', 'Quit', ...
    'Callback', pCallbacks.quit ...
);

%% Initialize edit menu

artoaGui.main.menus.edit = uimenu( ...
    artoaGui.figures.main, ...
    'Label', 'Edit', ...
    'Enable', 'off' ...
);

% TEMPERATURE
artoaGui.main.menus.editTemperature = uimenu( ...
    artoaGui.main.menus.edit, ...
    'Label', 'Temperature', ...
    'Callback', pCallbacks.openEditTemperature ...
);

% PRESSURE
artoaGui.main.menus.editPressure = uimenu( ...
    artoaGui.main.menus.edit, ...
    'Label', 'Pressure', ...
    'Callback', pCallbacks.openEditPressure ...
);

% TIME OF ARRIVAL
artoaGui.main.menus.editTimeOfArrival = uimenu( ...
    artoaGui.main.menus.edit, ...
    'Label', 'Time of arrival', ...
    'Callback', pCallbacks.openEditTimeOfArrival, ...
    'Separator', 'on', ...
    'Enable', 'off' ...
);

%% Initialize track menu

artoaGui.main.menus.track = uimenu( ...
    artoaGui.figures.main, ...
    'Label', 'Track', ...
    'Enable', 'off' ...
);

% TRAJECTORY OUTPUT
artoaGui.main.menus.trajectoryOutput = uimenu( ...
    artoaGui.main.menus.track, ...
    'Label', 'Trajectory output', ...
    'Callback', pCallbacks.openTrackTrajectoryOutput ...
);


%% Initialize view menu

artoaGui.main.menus.view = uimenu( ...
    artoaGui.figures.main, ...
    'Label', 'View', ...
    'Enable', 'on' ...
);

artoaGui.main.menus.viewHideDeletedDataPoints = uimenu( ...
    artoaGui.main.menus.view, ...
    'Label', 'Hide deleted data points', ...
    'Callback', pCallbacks.switchHideDeletedDataPoints ...
);


%% Version info

gitInfo = getGitInfo();

artoaGui.main.textVersionInfo = uicontrol( ...
    'Parent', artoaGui.figures.main, ...
    'String', artoa.versioning.getVersionString(), ...
    'Style', 'text', ...
    'FontSize', 10, ...
    'Units', 'characters', ...
    'Background', [1 1 1], ...
    'Position', [(widthWindow - 20) 1 20 1] ...
);

%% Float loaded status
artoaGui.main.textLoadedFloat = uicontrol( ...
    'Parent', artoaGui.figures.main, ...
    'String', 'No float loaded.', ...
    'Style', 'text', ...
    'FontSize', 10, ...
    'Units', 'characters', ...
    'HorizontalAlignment', 'left', ...
    'Background', [1 1 1], ...
    'Position', [3 1 80 1] ...
);

%% Track parameter

artoaGui.trackParameter.frameTrackingParameter = uipanel( ...
    'Parent', artoaGui.figures.main, ...
    'Title', 'Tracking Parameter', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [ ...
    spacer ...
    (1 - spacer - heightTrackingFrame) ...
    widthFrame ...
    heightTrackingFrame ...
    ] ...
);

% default geometry values for track parameter
left = .025;
width = .25;
buttonHeight = .3;

% Options frame

artoaGui.trackParameter.frameOptions = uipanel( ...
    'Parent', artoaGui.trackParameter.frameTrackingParameter, ...
    'Title', 'Corrections', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [left .75 width .20] ...
);

artoaGui.trackParameter.checkboxDopplerCorrection = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameOptions, ...
    'String', 'Apply Doppler Correction', ...
    'Style', 'checkbox', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .5 .9 .3], ...
    'Value', 1, ...
    'CallBack', pCallbacks.checkboxDopplerCorrection ...
);

artoaGui.trackParameter.checkboxBackwardTracking = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameOptions, ...
    'String', 'Enable backward tracking', ...
    'Style', 'checkbox', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .1 .9 .3], ...
    'Value', 0, ...
    'CallBack', pCallbacks.checkboxBackwardTracking ...
);

% Interpolation method frame
artoaGui.trackParameter.frameInterpolationMethod = uipanel( ...
    'Parent', artoaGui.trackParameter.frameTrackingParameter, ...
    'Title', 'Input Interpolation Method', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [(2*left + width) .75 width .20] ...
);

artoaGui.trackParameter.comboboxInterpolationMethod = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameInterpolationMethod, ...
    'String', pInterpolationMethods, ...
    'Style', 'popupmenu', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .5 .9 .4], ...
    'CallBack', pCallbacks.comboboxInterpolationMethod ...
);

artoaGui.trackParameter.textGapSize = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameInterpolationMethod, ...
    'String', 'Gap Size [days]', ...
    'Style', 'text', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .1 .5 .3], ...
    'CallBack', '' ...
);

artoaGui.trackParameter.inputGapSize = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameInterpolationMethod, ...
    'String', '10', ...
    'Style', 'edit', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(.7-left) .1 .3 .3], ...
    'CallBack', pCallbacks.inputGapSize ...
);

% Soundspeed method frame

artoaGui.trackParameter.frameSoundspeedMethod = uipanel( ...
    'Parent', artoaGui.trackParameter.frameTrackingParameter, ...
    'Title', 'Sound Speed Method', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [(3*left + 2*width) .75 width .20] ...
);

artoaGui.trackParameter.comboboxSoundspeedMethod = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameSoundspeedMethod, ...
    'String', pSoundspeedMethods, ...
    'Style', 'popupmenu', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .5 .9 .4], ...
    'CallBack', pCallbacks.comboboxSoundspeedMethod ...
);

artoaGui.trackParameter.checkboxPlotResiduals = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameSoundspeedMethod, ...
    'String', 'Plot Residuals', ...
    'Enable', 'off', ...
    'Style', 'checkbox', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .1 .9 .3], ...
    'CallBack', pCallbacks.checkboxPlotResiduals ...
);

% Output interpolation interval

artoaGui.trackParameter.textOutputInterpolationInterval = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameTrackingParameter, ...
    'String', 'Output Interpolation Interval [h]', ...
    'Style', 'text', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(4*left + 3*width) .75 (.5*width) .20], ...
    'CallBack', '' ...
);

artoaGui.trackParameter.inputOutputInterpolationInterval = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameTrackingParameter, ...
    'String', '24', ...
    'Style', 'edit', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(5*left + 3*width) .775 (.25*width) .05], ...
    'CallBack', pCallbacks.inputOutputInterpolationInterval ...
);

% Sound source combination table

columns = { ...
    'Begin', ...
    'End', ...
    'Sound Sources', ...
    'Reference Position', ...
    'Sound Speed', 'Sound Speed', 'Sound Speed', ...
    'Tracking Method' ...
};
columnFormat = cell(1, length(columns));
columnFormat{end} = pTrackingMethods;
artoaGui.trackParameter.tableSoundSourceCombinations = uitable( ...
    artoaGui.trackParameter.frameTrackingParameter, ...
    'Units', 'normalized', ...
    'Position', [left, 0.25, (5*left + 3.25*width), 0.45], ...
    'Data', cell(1, length(columns)), ...
    'ColumnName', columns, ...
    'ColumnEditable', true, ...
    'ColumnFormat', (columnFormat), ...
    'CellSelectionCallback', pCallbacks.tableSoundSourceCombinationsSelection,... %@(app,event) disp(num2str(event.Indices)) ...
    'CellEditCallback', pCallbacks.tableSoundSourceCombinationsEdit ...
);
clear columns columnFormat;

% Track buttons frame

artoaGui.trackParameter.frameTrackButtons = uipanel( ...
    'Parent', artoaGui.trackParameter.frameTrackingParameter, ...
    'Title', 'Tracking controls', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [(1-left-.8*width) .025 .75*width .1] ...
);

artoaGui.trackParameter.buttonTrack = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameTrackButtons, ...
    'String', 'Track', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .25 (1-2*left) 2.5*buttonHeight], ...
    'CallBack', pCallbacks.buttonTrack ...
);

% Combination buttons frame

artoaGui.trackParameter.frameCombinationButtons = uipanel( ...
    'Parent', artoaGui.trackParameter.frameTrackingParameter, ...
    'Title', 'Combination controls', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [left .125 (5*left + 3.25*width) .125] ...
);
factor = .6;

artoaGui.trackParameter.buttonAddCombination = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameCombinationButtons, ...
    'String', 'Add', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .1 factor*width 2.5*buttonHeight], ...
    'CallBack', pCallbacks.buttonAddCombination ...
);

artoaGui.trackParameter.buttonAddAboveCombination = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameCombinationButtons, ...
    'String', 'Add above selected', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(2*left + factor*width) .1 factor*width 2.5*buttonHeight], ...
    'CallBack', pCallbacks.buttonAddCombinationAbove ...
);

artoaGui.trackParameter.buttonDuplicateCombination = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameCombinationButtons, ...
    'String', 'Duplicate selected', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(3*left + 2*factor*width) .1 factor*width 2.5*buttonHeight], ...
    'CallBack', pCallbacks.buttonDuplicateCombination ...
);


artoaGui.trackParameter.buttonRemoveCombination = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameCombinationButtons, ...
    'String', 'Remove selected', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(4*left + 3*factor*width) .1 factor*width 2.5*buttonHeight], ...
    'CallBack', pCallbacks.buttonRemoveCombination ...
);

artoaGui.trackParameter.buttonResetAllCombinations = uicontrol( ...
    'Parent', artoaGui.trackParameter.frameCombinationButtons, ...
    'String', 'Reset All', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(1 - left - factor*width) .1 factor*width 2.5*buttonHeight], ...
    'CallBack', pCallbacks.buttonResetAllCombinations ...
);

clear left width buttonHeight factor;

%% Offset table

artoaGui.editOffsets.frameOffsets = uipanel( ...
    'Parent', artoaGui.figures.main, ...
    'Title', 'Offsets', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [ ...
    spacer ...
    (1 - 2 * spacer - heightFrame - heightTrackingFrame) ...
    widthFrame ...
    heightFrame ...
    ] ...
);

% setup geometry variables
left = 0.03;
fullwidth = 1 - (2 * left);

% Initialize offset table
artoaGui.editOffsets.tableSoundsourceOffsets = uitable( ...
    artoaGui.editOffsets.frameOffsets, ...
    'Units', 'normalized', ...
    'Position', [left, 0.5, fullwidth, 0.5], ...
    'ColumnEditable', true, ...
    'CellSelectionCallback', pCallbacks.tableSoundsourceOffsetsSelect, ...
    'CellEditCallback', pCallbacks.tableSoundsourceOffsetsEdit ...
);

% Initialize soundspeed table
artoaGui.editOffsets.tableSoundspeed = uitable( ...
    artoaGui.editOffsets.frameOffsets, ...
    'Units', 'normalized', ...
    'Position', [left, 0.375, fullwidth, 0.125], ...
    'ColumnEditable', true, ...'CellSelectionCallback', pCallbacks.tableSoundsourceOffsetsSelect, ...
    'CellEditCallback', pCallbacks.tableSoundspeedEdit ...
);

% Optimum offsets frame
artoaGui.editOffsets.frameOptimumOffsets = uipanel( ...
    'Parent', artoaGui.editOffsets.frameOffsets, ...
    'Title', 'Offset controls', ...
    'Units', 'normalized', ...
    'BackgroundColor', 'white', ...
    'Position', [left .025 fullwidth .3] ...
);

% Setup calculate offsets button

artoaGui.editOffsets.buttonCalculateOffsets = uicontrol( ...
    'Parent', artoaGui.editOffsets.frameOptimumOffsets, ...
    'String', 'Calculate offsets', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .25 fullwidth/2 .2], ...
    'CallBack', pCallbacks.buttonCalculateOffsets ...
);

artoaGui.editOffsets.checkboxUseOffsets = uicontrol( ...
    'Parent', artoaGui.editOffsets.frameOptimumOffsets, ...
    'String', 'Use offsets', ...
    'Style', 'checkbox', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [left .75 fullwidth/2 .2], ...
    'CallBack', pCallbacks.checkboxUseOffsets ...
);

artoaGui.editOffsets.textOffsetToApplied = uicontrol( ...
    'Parent', artoaGui.editOffsets.frameOptimumOffsets, ...
    'String', 'Copy', ...
    'Style', 'text', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(1.5*left + 4*fullwidth/8) .725 fullwidth/8 .2], ...
    'CallBack', '' ...
);

artoaGui.editOffsets.comboboxOffsetToApplied = uicontrol( ...
    'Parent', artoaGui.editOffsets.frameOptimumOffsets, ...
    'String', pOffsetsToCopy, ...
    'Style', 'popupmenu', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(1.5*left + 5*fullwidth/8) .725 2*fullwidth/8 .2], ...
    'CallBack', pCallbacks.comboboxInterpolationMethod ...
);

artoaGui.editOffsets.buttonCopyOffsets = uicontrol( ...
    'Parent', artoaGui.editOffsets.frameOptimumOffsets, ...
    'String', 'to Applied', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(1.5*left + 7*fullwidth/8) .725 fullwidth/8 .2], ...
    'CallBack', pCallbacks.buttonCopyOffsets ...
);

artoaGui.editOffsets.buttonAppliedToNan = uicontrol( ...
    'Parent', artoaGui.editOffsets.frameOptimumOffsets, ...
    'String', 'Applied to NaN', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(1.5*left + fullwidth/2) .275 fullwidth/2 .2], ...
    'CallBack', pCallbacks.buttonAppliedToNan ...
);

artoaGui.editOffsets.buttonUndoLastCopy = uicontrol( ...
    'Parent', artoaGui.editOffsets.frameOptimumOffsets, ...
    'String', 'Undo last copy', ...
    'Style', 'PushButton', ...
    'FontSize', 8, ...
    'Units', 'normalized', ...
    'Position', [(1.5*left + fullwidth/2) .05 fullwidth/2 .2], ...
    'CallBack', pCallbacks.buttonUndoLastCopy ...
);

end