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Reference for commit logs updated in the comments of sicopolis.F90.

Reference and names of contributors added in the comments
of sicopolis.F90.

Dates in sicopolis.F90 and the run-specs headers updated.

REPO_URL for input files in script get_input_files.sh changed
from ILTS's wwwice server to Zenodo repository.

Quick Start Manual preliminarily (!) updated,
Doxygen config file updated.

Test simulation renamed vialov3d25 -> v5_vialov3d25,
added in multi_sico_1.sh.

Test simulation renamed vialov3d25 -> v5_vialov3d25,
added in multi_sico_1.sh.

(in sicopolis.F90 and all run-specs headers).

for the basal-sliding parameters C_SLIDE and GAMMA_SLIDE.

Conflicts:
	src/sicopolis.F90

SICO_REVISION number (not well defined under git) replaced by
RUN_SPECS_HEADER_LAST_CHANGED date.
Comments re SIA/SStA hybrid dynamics slightly modified.

Computations for hybrid SIA/SStA schemes streamlined slightly
(divisions avoided etc.).
Writing of log file in sico_init corrected
(only relevent parameters written).

Some small changes in module calc_vxy_m: comments etc.

New parameters HYB_MODE and HYB_REF_SPEED now written to
run_name.log files by sico_init subroutines.

More detailed information added for installing NetCDF.

Installation support for NetCDF and Lis added.

Branch dynamics: add new parameter HYB_REF_SPEED in all run-specs headers. It defines the reference speed for the hybrid approach based on Bueler and Brown (2009).

Branch dynamics: add new parameter HYB_MODE in all run-specs headers. It defines the hybrid approach used to combine SIA and SStA velocities for grounded ice.

FLOATING_ICE_BASAL_MELTING==5 (taken from branch 'dynamics').

(EISMINT Phase 2 Simplified Geometry Experiment).

In the Antarctica header files, reference added for
FLOATING_ICE_BASAL_MELTING==5.

The subroutine read_phys_para (in module read_m) allows reading both
ASCII and NetCDF physical-parameter files, distinguished by their
extension ('.nc' for NetCDF, otherwise ASCII).
One NetCDF physical-parameter file each for Antarctica and Greenland
added.

Loops `do n=2, n_slide_regions` only attempted to be executed when
at least one execution will take place (i.e., n_slide_regions > 1).

It defines the file from which mask_region is to be read.

(only NetCDF files):
If the region mask (integer array mask_region) is defined,
in addition to the scalar output for the entire ice sheet
(runname_ser.nc), scalar output for the regions is written
to files runname_ser_region01.nc, runname_ser_region02.nc, ...

(but so far used only for Antarctica, where it distinguishes between
East Antarctica, West Antarctica and the Antarctic Peninsula).

Computation of the scalar output variables outsourced to
separate, new subroutine scalar_variables.

for Antarctica. It defines the file from which mask_region
is to be read.

(region mask that distinguishes between East Antarctica,
West Antarctica and the Antarctic Peninsula).
Either read from file (parameter MASK_REGION_FILE), or set to
a default distribution.

\!/ Requires updated versions of the input files
nhem80_{prec,temp}mm.dat for the northern hemisphere. They can be
downloaded with the script get_input_files.sh in the main directory
of SICOPOLIS (see Quick Start Manual).

re reading the sediment mask files.