fix(run_configs): changes example PISM config to work with Ant setup

run_configs/PI_Ctrl.yaml

@@ -32,6 +32,9 @@ echam:
                     parctl:
                             nprocar: 0
                             nprocbr: 0
+jsbach:
+    add_input_sources:
+        jsbach_1850: ${general.project_base}/nonstandard_pool_files/fesom/mesh_CORE2_finaltopo_mean/tarfilesT63/input/jsbach/jsbach_T63CORE2_11tiles_5layers_1850.nc
 
 fesom:
     resolution: "CORE2"
@@ -39,39 +42,40 @@ fesom:
     restart_rate: 1
     restart_unit: "y"
     restart_first: 1
+    mesh_dir: ${general.project_base}/nonstandard_pool_files/fesom/mesh_CORE2_finaltopo_mean/
+    namelist_changes:
+            namelist.config:
+                    paths:
+                            ClimateDataPath: "${general.project_base}/nonstandard_pool_files/fesom/hydrography/"
 
 
 pism:
         debug_override_file_generation: False
-        domain: "greenland"
-        resolution: "10km"
+        domain: "antarctica"
+        resolution: "16km"
         model_dir: ${general.project_base}/model_codes/awiesm-2.2/pism-github1.2.1/
         bin_dir: ${pism.model_dir}/bin/
         lresume: 1
         ini_parent_exp_id: "pism_antarctica01"  # Needed, but not used
         ini_parent_date: "0001-01-01" # Needed, but not used
-        ini_restart_dir: "/work/ollie/lackerma/awicm_pism_tests/pism_antarctica01/restart/pism"  # Needed, but not used.
+        ini_restart_dir: "${general.project_base}/restart_files_from_lars/pism/"  # Needed, but not used.
 
         # This is the actual spinup file from the last experiment:
-        spinup_file: "/work/ollie/pgierz/test_esmtools/input_files_from_lars/pismr_antarctica_16km.spinup_start.nc"
+        spinup_file: "${general.project_base}/input_files_from_lars/pismr_antarctica_16km.spinup_start.nc"
 
         flags:
                 - "no_subgl_basal_melt"
                 - "subgl"
         # Evaluates to flags in the pism command:
         # ./pismr -no_subgl_basal_melt -subgl
-        kv_pairs:
-                verbose: 2
+        #kv_pairs:
+        #        verbose: 2
         # Evalues to key-value pairs like this:
         # ./pismr -verbose 2
 
         # ./pismr -atmosphere given,lapse_rate -atmosphere_given_file climate_forcing_LIG_16km_monthly.nc -atmosphere_given_period 1 -atmosphere.use_precip_linear_factor_for_temperature no -surface pdd -surface_lapse_rate_file usurf_echam_PI_LIG.nc -low_temp 100
-        overrides_kv_pairs:
-                verbose: 5
-                "atmosphere.use_precip_linear_factor_for_temperature": "no"
-                "my_wonderful_config_option": 88
 
-        forcing_input_dir: "/work/ollie/pgierz/test_esmtools/forcing_files_from_lars/"
+        forcing_input_dir: "${general.project_base}/forcing_files_from_lars/"
         couplers:
                 atmosphere:
                     given:
@@ -79,7 +83,6 @@ pism:
                             atmosphere_given_file: "${forcing_input_dir}/climate_forcing_LIG_16km_monthly.nc"
                         kv_pairs:
                             atmosphere_given_period: 1
-                            atmosphere.use_precip_linear_factor_for_temperature: "no"
                     lapse_rate:
                         files:
                             atmosphere_lapse_rate_file: "${forcing_input_dir}/usurf_echam_PI_LIG.nc"