build(model_codes,-software): include the awi-esm 2.2 model, switch to a...

build(model_codes,-software): include the awi-esm 2.2 model, switch to a esm-tools version capable of compiling all parts of awi-esm 2.2

build(model_codes,-software): include the awi-esm 2.2 model, switch to a...
c02ebb50 · Paul Gierz · 182372db · c02ebb50 · c02ebb50 · c02ebb50
Commit c02ebb50 authored Feb 1, 2021 by Paul Gierz
--- a/.gitignore
+++ b/.gitignore
 .venv
+model_codes/awiesm-2.2/bin
+model_codes/awiesm-2.2/lib
--- a/.gitmodules
+++ b/.gitmodules
-[submodule "model_codes/pism-github1.2.1"]
-	path = model_codes/pism-github1.2.1
-	url = https://github.com/pism/pism.git
 [submodule "software/esm_tools"]
 	path = software/esm_tools
 	url = https://github.com/esm-tools/esm_tools.git
 [submodule "software/esm_runscripts"]
 	path = software/esm_runscripts
 	url = https://github.com/esm-tools/esm_runscripts.git
+[submodule "model_codes/awiesm-2.2/debm-esm_tools"]
+	path = model_codes/awiesm-2.2/debm-esm_tools
+	url = https://github.com/ukrebska/dEBM
+[submodule "model_codes/awiesm-2.2/echam-6.3.05p2-concurrent_radiation-paleodyn"]
+	path = model_codes/awiesm-2.2/echam-6.3.05p2-concurrent_radiation-paleodyn
+	url = https://gitlab.awi.de/pgierz/echam6.git
+[submodule "model_codes/awiesm-2.2/fesom-2.0"]
+	path = model_codes/awiesm-2.2/fesom-2.0
+	url = https://a270077@gitlab.dkrz.de/FESOM/fesom2.git
+[submodule "model_codes/awiesm-2.2/oasis"]
+	path = model_codes/awiesm-2.2/oasis
+	url = https://a270077@gitlab.dkrz.de/modular_esm/oasis3-mct.git
+[submodule "model_codes/awiesm-2.2/pism-github1.2.1"]
+	path = model_codes/awiesm-2.2/pism-github1.2.1
+	url = https://github.com/pism/pism.git
+[submodule "model_codes/awiesm-2.2/scope-dev"]
+	path = model_codes/awiesm-2.2/scope-dev
+	url = https://gitlab.awi.de/pgierz/scope.git
--- a/model_codes/awiesm-2.2/comp-echam-6.3.05p2-concurrent_radiation-paleodyn_script.sh
+++ b/model_codes/awiesm-2.2/comp-echam-6.3.05p2-concurrent_radiation-paleodyn_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export OIFS_OASIS_BASE=$(pwd)/oasis
+export OIFS_OASIS_INCLUDE="-I$OIFS_OASIS_BASE/build/lib/psmile -I$OIFS_OASIS_BASE/build/lib/psmile/scrip -I$OIFS_OASIS_BASE/build/lib/psmile/mct -I$OIFS_OASIS_BASE/build/lib/psmile/mct/mpeu"
+export OASIS3MCT_FC_LIB=$(pwd)/lib/
+export OASIS3MCTROOT=$(pwd)/oasis/
+export configure_opts=--with-coupler=oasis3-mct
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd echam-6.3.05p2-concurrent_radiation-paleodyn
+./config/createMakefiles.pl; autoreconf -i --force; mkdir -p src/.deps yaxt/src/.deps yaxt/tests/.deps; ./configure $configure_opts --with-fortran=intel INSTALL='/usr/bin/install -p'; make -j `nproc --all`; make install -j `nproc --all`; mkdir -p src/echam/bin; cp  bin/echam6 src/echam/bin/echam6
+cd ..
--- a/model_codes/awiesm-2.2/comp-fesom-2.0-paleodyn_script.sh
+++ b/model_codes/awiesm-2.2/comp-fesom-2.0-paleodyn_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+module unload gcc
+module load gcc/4.8.2
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export takenfrom='fesom1'
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd fesom-2.0
+mkdir -p build; cd build; cmake ..;   make install -j `nproc --all`
+cd ..
--- a/model_codes/awiesm-2.2/comp-oasis3mct-2.8_script.sh
+++ b/model_codes/awiesm-2.2/comp-oasis3mct-2.8_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd oasis
+mkdir -p build; cd build; cmake ..;   make -j 1; mkdir -p ../include/; cp lib/psmile/libpsmile.a lib/psmile/mct/libmct.a lib/psmile/mct/mpeu/libmpeu.a lib/psmile/scrip/libscrip.a ../lib; cp lib/psmile/mod_oasis*mod ../include 
+cd ..
--- a/model_codes/awiesm-2.2/comp-pism-github1.2.1_script.sh
+++ b/model_codes/awiesm-2.2/comp-pism-github1.2.1_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export UDUNITS2_ROOT=/sw/rhel6-x64/util/udunits-2.2.26-gcc64
+export FFTW_ROOT=/sw/rhel6-x64/numerics/fftw-3.3.7-openmp-gcc64
+export PROJ4_ROOT=/sw/rhel6-x64/graphics/proj4-4.9.3-gcc48
+export PETSC_DIR=/sw/rhel6-x64/numerics/PETSc-3.12.2-impi2018-intel18/
+export GCC_NAME=/sw/rhel6-x64/gcc/gcc-6.4.0/bin/gcc
+export GXX_NAME=/sw/rhel6-x64/gcc/gcc-6.4.0/bin/g++
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd pism-github1.2.1
+mkdir -p build; cd build; export PISM_INSTALL_PREFIX=$(readlink -f $(pwd)/..); cmake \
+        -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
+        -DCMAKE_BUILD_TYPE=RelWithDebInfo \
+        -DPism_BUILD_TYPE=RelWithDebInfo \
+        -DCMAKE_CXX_COMPILER=$CXX \
+        -DCMAKE_CXX_FLAGS="-O3 -fp-model precise -no-fast-transcendentals -march=native -gcc-name=$GCC_NAME -gxx-name=$GXX_NAME" \
+        -DCMAKE_C_COMPILER=$CC  \
+        -DCMAKE_C_FLAGS="-O3 -march=native -fp-model precise -gcc-name=$GCC_NAME -gxx-name=$GXX_NAME -no-fast-transcendentals" \
+        -DPETSC_EXECUTABLE_RUNS:BOOL=ON \
+        -DMPI_C_DIR="$I_MPI_ROOT" \
+        -DPism_USE_JANSSON:BOOL=NO \
+        -DPism_USE_PARALLEL_NETCDF4:BOOL=OFF \
+        -DPism_USE_PARALLEL_HDF5:BOOL=OFF \
+        -DPism_USE_PROJ4:BOOL=YES \
+        -DPism_BUILD_EXTRA_EXECS:BOOL=ON \
+        ..; make -j4; make install;
+
+cd ..
--- a/model_codes/awiesm-2.2/comp-scope-dev_script.sh
+++ b/model_codes/awiesm-2.2/comp-scope-dev_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd scope-dev
+mkdir bin; pip install --user -e .; cp $(python -m site --user-base)/bin/scope ./bin 
+cd ..
--- a/debm-esm_tools @ 1889719e
+++ b/debm-esm_tools @ 1889719e
+Subproject commit 1889719e902a583c40b45aabf12b23b66a9e9ed5
--- a/echam-6.3.05p2-concurrent_radiation-p... @ 26ef9991
+++ b/echam-6.3.05p2-concurrent_radiation-p... @ 26ef9991
+Subproject commit 26ef999189810dad8441099a5c90ca7d385f52e3
--- a/fesom-2.0 @ 06449d07
+++ b/fesom-2.0 @ 06449d07
+Subproject commit 06449d07d90c7647f8e1100cf86534249b3f98fe
--- a/oasis @ 556a40fd
+++ b/oasis @ 556a40fd
+Subproject commit 556a40fd6994febef0fc3cda76ac451205865e01
--- a/pism-github1.2.1 @ 5e1debde
+++ b/pism-github1.2.1 @ 5e1debde
--- a/scope-dev @ 6d6dea51
+++ b/scope-dev @ 6d6dea51
+Subproject commit 6d6dea5124346d1c0b2d9ee17d5eb5a2325d34ae
--- a/model_codes/compile_scripts/esm-tools/comp-debm-esm_tools_script.sh
+++ b/model_codes/compile_scripts/esm-tools/comp-debm-esm_tools_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd debm-esm_tools
+cd Fortran-v1.0; mkdir -p build; cd build; cmake ..; make -j `nproc --all`
+cd ..
--- a/model_codes/compile_scripts/esm-tools/comp-echam-6.3.05p2-concurrent_radiation-paleodyn_script.sh
+++ b/model_codes/compile_scripts/esm-tools/comp-echam-6.3.05p2-concurrent_radiation-paleodyn_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export OIFS_OASIS_BASE=$(pwd)/oasis
+export OIFS_OASIS_INCLUDE="-I$OIFS_OASIS_BASE/build/lib/psmile -I$OIFS_OASIS_BASE/build/lib/psmile/scrip -I$OIFS_OASIS_BASE/build/lib/psmile/mct -I$OIFS_OASIS_BASE/build/lib/psmile/mct/mpeu"
+export OASIS3MCT_FC_LIB=$(pwd)/lib/
+export OASIS3MCTROOT=$(pwd)/oasis/
+export configure_opts=--with-coupler=oasis3-mct
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd echam-6.3.05p2-concurrent_radiation-paleodyn
+./config/createMakefiles.pl; autoreconf -i --force; mkdir -p src/.deps yaxt/src/.deps yaxt/tests/.deps; ./configure $configure_opts --with-fortran=intel INSTALL='/usr/bin/install -p'; make -j `nproc --all`; make install -j `nproc --all`; mkdir -p src/echam/bin; cp  bin/echam6 src/echam/bin/echam6
+cd ..
--- a/model_codes/compile_scripts/esm-tools/comp-fesom-2.0-paleodyn_script.sh
+++ b/model_codes/compile_scripts/esm-tools/comp-fesom-2.0-paleodyn_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+module unload gcc
+module load gcc/4.8.2
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export takenfrom='fesom1'
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd fesom-2.0
+mkdir -p build; cd build; cmake ..;   make install -j `nproc --all`
+cd ..
--- a/model_codes/compile_scripts/esm-tools/comp-oasis3mct-2.8_script.sh
+++ b/model_codes/compile_scripts/esm-tools/comp-oasis3mct-2.8_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd oasis
+mkdir -p build; cd build; cmake ..;   make -j 1; mkdir -p ../include/; cp lib/psmile/libpsmile.a lib/psmile/mct/libmct.a lib/psmile/mct/mpeu/libmpeu.a lib/psmile/scrip/libscrip.a ../lib; cp lib/psmile/mod_oasis*mod ../include 
+cd ..
--- a/model_codes/compile_scripts/esm-tools/comp-pism-github1.2.1_script.sh
+++ b/model_codes/compile_scripts/esm-tools/comp-pism-github1.2.1_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export UDUNITS2_ROOT=/sw/rhel6-x64/util/udunits-2.2.26-gcc64
+export FFTW_ROOT=/sw/rhel6-x64/numerics/fftw-3.3.7-openmp-gcc64
+export PROJ4_ROOT=/sw/rhel6-x64/graphics/proj4-4.9.3-gcc48
+export PETSC_DIR=/sw/rhel6-x64/numerics/PETSc-3.12.2-impi2018-intel18/
+export GCC_NAME=/sw/rhel6-x64/gcc/gcc-6.4.0/bin/gcc
+export GXX_NAME=/sw/rhel6-x64/gcc/gcc-6.4.0/bin/g++
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd pism-github1.2.1
+mkdir -p build; cd build; export PISM_INSTALL_PREFIX=$(readlink -f $(pwd)/..); cmake \
+        -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
+        -DCMAKE_BUILD_TYPE=RelWithDebInfo \
+        -DPism_BUILD_TYPE=RelWithDebInfo \
+        -DCMAKE_CXX_COMPILER=$CXX \
+        -DCMAKE_CXX_FLAGS="-O3 -fp-model precise -no-fast-transcendentals -march=native -gcc-name=$GCC_NAME -gxx-name=$GXX_NAME" \
+        -DCMAKE_C_COMPILER=$CC  \
+        -DCMAKE_C_FLAGS="-O3 -march=native -fp-model precise -gcc-name=$GCC_NAME -gxx-name=$GXX_NAME -no-fast-transcendentals" \
+        -DPETSC_EXECUTABLE_RUNS:BOOL=ON \
+        -DMPI_C_DIR="$I_MPI_ROOT" \
+        -DPism_USE_JANSSON:BOOL=NO \
+        -DPism_USE_PARALLEL_NETCDF4:BOOL=OFF \
+        -DPism_USE_PARALLEL_HDF5:BOOL=OFF \
+        -DPism_USE_PROJ4:BOOL=YES \
+        -DPism_BUILD_EXTRA_EXECS:BOOL=ON \
+        ..; make -j4; make install;
+
+cd ..
--- a/model_codes/compile_scripts/esm-tools/comp-scope-dev_script.sh
+++ b/model_codes/compile_scripts/esm-tools/comp-scope-dev_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+
+cd scope-dev
+mkdir bin; pip install --user -e .; cp $(python -m site --user-base)/bin/scope ./bin 
+cd ..
--- a/model_codes/compile_scripts/esm-tools/dummy_script.sh
+++ b/model_codes/compile_scripts/esm-tools/dummy_script.sh
+# Dummy script generated by esm-tools, to be removed later: 
+set -e
+module purge
+module unload netcdf_c
+module unload intel intelmpi
+module load python/3.5.2
+module load cmake/3.13.3
+module load autoconf/2.69
+module load nco
+module load cdo
+module unload intel intelmpi
+module load intel/18.0.4 intelmpi/2018.5.288
+module load libtool/2.4.6
+module load automake/1.14.1
+
+export LC_ALL=en_US.UTF-8
+export FC=mpiifort
+export F77=mpiifort
+export MPIFC=mpiifort
+export CC=mpiicc
+export CXX=mpiicpc
+export MPIROOT="$(mpiifort -show | perl -lne 'm{ -I(.*?)/include } and print $1')"
+export MPI_LIB="$(mpiifort -show |sed -e 's/^[^ ]*//' -e 's/-[I][^ ]*//g')"
+export HDF5ROOT=/sw/rhel6-x64/hdf5/hdf5-1.8.14-parallel-impi-intel14/
+export HDF5_C_INCLUDE_DIRECTORIES=$HDF5ROOT/include
+export HDF5_ROOT=$HDF5ROOT
+export NETCDFFROOT=/sw/rhel6-x64/netcdf/netcdf_fortran-4.4.2-parallel-impi-intel14/
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.4.1.1-parallel-impi-intel14/
+export NETCDF_Fortran_INCLUDE_DIRECTORIES=$NETCDFFROOT/include
+export NETCDF_C_INCLUDE_DIRECTORIES=$NETCDFROOT/include
+export NETCDF_CXX_INCLUDE_DIRECTORIES=/sw/rhel6-x64/netcdf/netcdf_cxx-4.2.1-gcc48/include
+export LAPACK_LIB='-mkl=sequential'
+export LAPACK_LIB_DEFAULT='-L/sw/rhel6-x64/intel/intel-18.0.1/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential'
+export PERL5LIB=/usr/lib64/perl5
+export SZIPROOT=/sw/rhel6-x64/sys/libaec-0.3.2-gcc48
+export ZLIBROOT=/usr
+export OASIS3MCT_FC_LIB="-L$NETCDFFROOT/lib -lnetcdff"
+export LD_LIBRARY_PATH=$NETCDFROOT/lib:$NETCDFFROOT/lib:$HDF5ROOT/lib:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/sw/rhel6-x64/gcc/gcc-6.4.0/lib64:$LD_LIBRARY_PATH
+export I_MPI_FABRICS=shm:dapl
+export I_MPI_FALLBACK=disable
+export I_MPI_SLURM_EXT=1
+export I_MPI_LARGE_SCALE_THRESHOLD=8192
+export I_MPI_DYNAMIC_CONNECTION=1
+export DAPL_NETWORK_NODES=$SLURM_NNODES
+export DAPL_NETWORK_PPN=$SLURM_NTASKS_PER_NODE
+export DAPL_WR_MAX=500
+export OMPI_MCA_pml=cm
+export OMPI_MCA_mtl=mxm
+export OMPI_MCA_coll=^ghc
+export OMPI_MCA_mtl_mxm_np=0
+export MXM_RDMA_PORTS=mlx5_0:1
+export MXM_LOG_LEVEL=FATAL
+export NETCDFROOT=/sw/rhel6-x64/netcdf/netcdf_c-4.3.2-gcc48
+export LD_LIBRARY_PATH=/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-impi-intel14/lib/:$LD_LIBRARY_PATH
+export ENVIRONMENT_SET_BY_ESMTOOLS=TRUE
+